DownLoad Files By Gene and FileType (all times)
blmp-1
C08G9.2
ceh-14
ceh-18
ceh-2
ceh-24
ceh-30
ceh-31
ceh-9
ces-1
dve-1
elt-4
eyg-1
F53H4.5
fax-1
fkh-10
fkh-6
ham-2
hlh-15
lim-6
lin-11
mab-5
mec-3
pag-3
pqm-1
rnt-1
sox-4
tbx-7
ttx-3
unc-3
unc-42
unc-86
WT
Y22D7AL.16
zip-5
blmp-1
C08G9.2
ceh-14
ceh-18
ceh-2
ceh-24
ceh-30
ceh-31
ceh-9
ces-1
dve-1
elt-4
eyg-1
F53H4.5
fax-1
fkh-10
fkh-6
ham-2
hlh-15
lim-6
lin-11
mab-5
mec-3
pag-3
pqm-1
rnt-1
sox-4
tbx-7
ttx-3
unc-3
unc-42
unc-86
WT
Y22D7AL.16
zip-5
DifferentialExpressionGenes
IndividualAlignment
MergedAlignment
MergedAlignmentDupsRemoved
ReadCounts
SequenceFastq
TranscriptTPM
DifferentialExpressionGenes
IndividualAlignment
MergedAlignment
MergedAlignmentDupsRemoved
ReadCounts
SequenceFastq
TranscriptTPM
DownLoad
DownLoad Files By Gene, Stage, and FileType
B0035.1
B0261.1
B0310.2
C04F5.9
C08G9.2
C16A3.4
C34B4.2
C34F6.9
C38D4.7
F10B5.3
F10E7.11
F13C5.2
F13H6.1
F16B12.6
F22D6.2
F23B12.7
F37D6.2
F49E8.2
F52B5.7
F55B11.4
F57A8.1
F57C9.4
K02D7.2
K09A11.1
K12H6.12
M03D4.4
R02D3.7
T07F8.4
T20F7.1
T23F11.4
T26A5.8
W03F9.2
Y116A8C.19
Y22D7AL.16
Y55F3AM.14
Y5F2A.4
ZK185.1
ZK546.5
aha-1
ahr-1
akir-1
alr-1
aly-1
aly-2
ama-1
atf-7
athp-1
attf-4
attf-5
bed-3
blmp-1
ccch-3
cebp-1
ceh-13
ceh-14
ceh-16
ceh-18
ceh-19
ceh-2
ceh-22
ceh-24
ceh-27
ceh-28
ceh-30
ceh-31
ceh-32
ceh-34
ceh-36
ceh-39
ceh-43
ceh-48
ceh-6
ceh-62
ceh-63
ceh-79
ceh-8
ceh-82
ceh-83
ceh-9
ceh-90
ces-1
cey-2
chd-7
che-1
cnd-1
cog-1
crh-2
daf-12
daf-16
dao-5
die-1
dmd-4
dpff-1
dpl-1
drap-1
dsc-1
duxl-1
dve-1
efl-1
efl-3
egl-13
egl-27
egl-5
elt-1
elt-2
elt-3
elt-4
eor-1
ets-4
ets-7
eyg-1
fax-1
fkh-10
fkh-2
fkh-3
fkh-4
fkh-6
fkh-8
flh-1
fos-1
gei-17
gei-8
gmeb-1
gmeb-2
ham-2
hif-1
him-1
hlh-1
hlh-11
hlh-12
hlh-13
hlh-15
hlh-17
hlh-30
hlh-4
hlh-6
hlh-8
hmbx-1
hmg-11
hmg-4
hnd-1
hpl-2
hrde-1
irx-1
jun-1
let-607
lim-6
lin-11
lin-13
lin-14
lin-15B
lin-32
lin-35
lin-39
lin-40
lin-54
lir-3
lsl-1
lsy-12
lsy-2
lsy-27
mab-5
madf-10
madf-2
mbf-1
mdl-1
mec-3
med-1
mef-2
mel-28
mep-1
mes-2
mes-4
mls-2
mml-1
mxl-1
mxl-3
nfya-1
nhr-10
nhr-102
nhr-11
nhr-111
nhr-12
nhr-129
nhr-179
nhr-2
nhr-20
nhr-21
nhr-23
nhr-232
nhr-237
nhr-25
nhr-27
nhr-28
nhr-43
nhr-47
nhr-48
nhr-6
nhr-67
nhr-71
nhr-76
nhr-77
nhr-80
nhr-84
nhr-85
nhr-90
npax-4
odd-2
pag-3
pat-9
pax-1
pax-3
peb-1
pha-2
pha-4
pop-1
pqm-1
pros-1
rbr-2
rec-8
ref-2
repo-1
rnt-1
rpc-1
sdc-2
sdz-12
sdz-38
sea-2
sem-2
sem-4
skn-1
sma-3
sma-9
snai-1
snpc-1.1
snpc-1.3
snpc-3.4
snpc-4
snu-23
somi-1
sox-4
spr-1
spr-3
sptf-1
sptf-2
sup-37
swsn-7
syd-9
tbp1
tbx-2
tbx-7
tbx-8
tbx-9
tlf-1
tlp-1
tra-4
ttx-3
unc-120
unc-130
unc-3
unc-30
unc-39
unc-42
unc-55
unc-62
unc-86
vab-15
xbp-1
xnd-1
zag-1
zfp-2
zim-3
zip-2
zip-4
zip-5
zip-8
znf-207
ztf-11
ztf-16
ztf-18
ztf-22
ztf-26
ztf-3
ztf-4
ztf-7
B0035.1
B0261.1
B0310.2
C04F5.9
C08G9.2
C16A3.4
C34B4.2
C34F6.9
C38D4.7
F10B5.3
F10E7.11
F13C5.2
F13H6.1
F16B12.6
F22D6.2
F23B12.7
F37D6.2
F49E8.2
F52B5.7
F55B11.4
F57A8.1
F57C9.4
K02D7.2
K09A11.1
K12H6.12
M03D4.4
R02D3.7
T07F8.4
T20F7.1
T23F11.4
T26A5.8
W03F9.2
Y116A8C.19
Y22D7AL.16
Y55F3AM.14
Y5F2A.4
ZK185.1
ZK546.5
aha-1
ahr-1
akir-1
alr-1
aly-1
aly-2
ama-1
atf-7
athp-1
attf-4
attf-5
bed-3
blmp-1
ccch-3
cebp-1
ceh-13
ceh-14
ceh-16
ceh-18
ceh-19
ceh-2
ceh-22
ceh-24
ceh-27
ceh-28
ceh-30
ceh-31
ceh-32
ceh-34
ceh-36
ceh-39
ceh-43
ceh-48
ceh-6
ceh-62
ceh-63
ceh-79
ceh-8
ceh-82
ceh-83
ceh-9
ceh-90
ces-1
cey-2
chd-7
che-1
cnd-1
cog-1
crh-2
daf-12
daf-16
dao-5
die-1
dmd-4
dpff-1
dpl-1
drap-1
dsc-1
duxl-1
dve-1
efl-1
efl-3
egl-13
egl-27
egl-5
elt-1
elt-2
elt-3
elt-4
eor-1
ets-4
ets-7
eyg-1
fax-1
fkh-10
fkh-2
fkh-3
fkh-4
fkh-6
fkh-8
flh-1
fos-1
gei-17
gei-8
gmeb-1
gmeb-2
ham-2
hif-1
him-1
hlh-1
hlh-11
hlh-12
hlh-13
hlh-15
hlh-17
hlh-30
hlh-4
hlh-6
hlh-8
hmbx-1
hmg-11
hmg-4
hnd-1
hpl-2
hrde-1
irx-1
jun-1
let-607
lim-6
lin-11
lin-13
lin-14
lin-15B
lin-32
lin-35
lin-39
lin-40
lin-54
lir-3
lsl-1
lsy-12
lsy-2
lsy-27
mab-5
madf-10
madf-2
mbf-1
mdl-1
mec-3
med-1
mef-2
mel-28
mep-1
mes-2
mes-4
mls-2
mml-1
mxl-1
mxl-3
nfya-1
nhr-10
nhr-102
nhr-11
nhr-111
nhr-12
nhr-129
nhr-179
nhr-2
nhr-20
nhr-21
nhr-23
nhr-232
nhr-237
nhr-25
nhr-27
nhr-28
nhr-43
nhr-47
nhr-48
nhr-6
nhr-67
nhr-71
nhr-76
nhr-77
nhr-80
nhr-84
nhr-85
nhr-90
npax-4
odd-2
pag-3
pat-9
pax-1
pax-3
peb-1
pha-2
pha-4
pop-1
pqm-1
pros-1
rbr-2
rec-8
ref-2
repo-1
rnt-1
rpc-1
sdc-2
sdz-12
sdz-38
sea-2
sem-2
sem-4
skn-1
sma-3
sma-9
snai-1
snpc-1.1
snpc-1.3
snpc-3.4
snpc-4
snu-23
somi-1
sox-4
spr-1
spr-3
sptf-1
sptf-2
sup-37
swsn-7
syd-9
tbp1
tbx-2
tbx-7
tbx-8
tbx-9
tlf-1
tlp-1
tra-4
ttx-3
unc-120
unc-130
unc-3
unc-30
unc-39
unc-42
unc-55
unc-62
unc-86
vab-15
xbp-1
xnd-1
zag-1
zfp-2
zim-3
zip-2
zip-4
zip-5
zip-8
znf-207
ztf-11
ztf-16
ztf-18
ztf-22
ztf-26
ztf-3
ztf-4
ztf-7
L1larva
L2larva
L3larva
L4_youngadult
L4larva
dauer
earlyembryonic
lateembryonic
midembryonic
mixedstage(embryonic)
youngadult
L1larva
L2larva
L3larva
L4_youngadult
L4larva
dauer
earlyembryonic
lateembryonic
midembryonic
mixedstage(embryonic)
youngadult
alignments
control normalized signal
optimal IDR thresholded peaks
peaks
peaks and background as input for IDR
read-depth normalized signal
reads
signal of unique reads
alignments
control normalized signal
optimal IDR thresholded peaks
peaks
peaks and background as input for IDR
read-depth normalized signal
reads
signal of unique reads
Unzipped download size: 0 bytes (limit 10 GB per download)
DownLoad
DownLoad Files By Gene, Stage, and FileType
ATbp
Abd-B
Antp
Asciz
Atf-2
Atf3
B-H2
BEAF-32
Bdp1
Blimp-1
BtbVII
Bteb2
BuGZ
CG10147
CG10209
CG10267
CG10274
CG10431
CG10462
CG10543
CG10565
CG10631
CG10654
CG10669
CG10979
CG11398
CG11504
CG11617
CG11723
CG11762
CG11902
CG12071
CG12104
CG12155
CG12219
CG12236
CG12299
CG1233
CG12391
CG12659
CG12744
CG12768
CG12769
CG12942
CG13123
CG13204
CG13296
CG13424
CG13624
CG13775
CG13894
CG14655
CG14710
CG14711
CG14965
CG15011
CG15073
CG15269
CG1529
CG15479
CG15514
CG15601
CG15696
CG15710
CG1602
CG1603
CG1620
CG1621
CG1647
CG1663
CG16779
CG16815
CG16863
CG17181
CG17186
CG17359
CG17385
CG17568
CG17802
CG17806
CG17829
CG17912
CG1792
CG18011
CG18262
CG1832
CG18476
CG18599
CG18619
CG18764
CG2116
CG2120
CG2202
CG2678
CG2712
CG2875
CG30020
CG3032
CG30403
CG30431
CG3065
CG31365
CG31388
CG31627
CG3163
CG32006
CG32264
CG3281
CG33017
CG33213
CG33557
CG3407
CG34367
CG34376
CG34406
CG3838
CG3919
CG3995
CG4282
CG4318
CG4328
CG43347
CG4424
CG4617
CG4707
CG4820
CG4854
CG5180
CG5204
CG5245
CG6254
CG6276
CG6654
CG6683
CG6765
CG6792
CG6808
CG6813
CG6854
CG7045
CG7101
CG7271
CG7368
CG7556
CG7745
CG7786
CG7839
CG7928
CG7987
CG8089
CG8159
CG8281
CG8290
CG8301
CG8319
CG8359
CG8388
CG8478
CG8632
CG8924
CG8944
CG9139
CG9437
CG9609
CG9705
CG9727
CG9797
CG9817
CG9876
CG9948
CHES-1-like
CTCF
Camta
Chrac-16
Clamp
Clk
CoRest
Coop
CrebA
CrebB
Crg-1
D
D1
D19A
D19B
Dad
Deaf1
Dek
Dfd
Dif
Dip3
Dll
Dp
E(bx)
E(spl)m3-HLH
E(spl)m5-HLH
E(spl)m7-HLH
E(spl)m8-HLH
E(spl)mβ-HLH
E(spl)mγ-HLH
E(var)3-9
E(z)
ERR
EcR
Eip74EF
Eip75B
Eip78C
Eip93F
Elba2
Ets21C
Ets65A
Ets96B
Ets97D
Fer1
Fer2
Fer3
FoxL1
GATAd
HHEX
HLH106
HLH54F
HLHmδ
Hand
Hey
HmgD
HmgZ
Hmr
Hmx
Hnf4
Hr3
Hr38
Hr39
Hr4
Hr46
Hr51
Hr78
Hr83
Hr96
Hsf
Jarid2
Jra
Kah
Klf15
Kr
Lhr
Lpt
M1BP
MESR4
MTF-1
Mabi
Mad
Max
Med
Meics
Mes4
Met
Mio
Mnt
Mondo
Myb
Myc
N
NC2alpha
NC2α
NC2β
NK7.1
Neu2
Nf-YB
Nf-YC
NfI
OdsH
Oli
Orc2
PHDP
Pcl
Pdp1
Pif1A
Pif1B
Plzf
Rel
RpII215
Side
Sin3A
Six4
Smox
Snoo
Sox100B
Sox102F
Sox14
Sox15
Sp1
Spps
Sry-beta
Sry-delta
Sry-β
Sry-δ
Ssrp
Stat92E
Su(H)
Su(var)2-10
Su(var)2-HP2
Su(var)205
Su(var)3-7
Su(var)3-9
TFAM
Tbp
Trl
Ubx
Usf
Vsx1
Vsx2
Xbp1
YL-1
ZIPIC
Zif
ab
abd-A
ac
achi
acj6
ash1
az2
bab1
bab2
bcd
bigmax
bon
br
brk
bsh
btn
cad
cato
caup
cbt
cg
chif
chn
cic
cnc
corto
crc
crp
cwo
cyc
da
dac
disco
disco-r
dl
dm
dmrt11E
dmrt93B
dmrt99B
dpn
dsf
dsx
emc
ems
en
esn
eve
ewg
exd
exex
ey
eyg
fd102C
fd3F
fd59A
fd64A
fd85E
fd96Cb
fkh
foxo
fru
ftz-f1
fu2
gcm
gcm2
gem
gfzf
gl
grau
grh
grn
gro
gsb-n
h
her
hkb
hth
ind
insv
jim
jing
jumu
kay
kni
l(3)neo38
lab
lbe
lilli
lola
lov
luna
lz
maf-S
mam
mirr
mod(mdg4)
nau
nej
nerfin-1
net
nmo
noc
nom
oc
odd
org-1
ouib
ovo
p53
pad
pan
pb
pdm3
pfk
pho
phol
pita
pnt
prd
prg
pros
psq
pum
pzg
repo
rgr
run
sage
salm
salr
sc
schlank
scrt
sd
sens
shn
sima
slou
slp2
spab
sqz
ss
stwl
su(Hw)
sug
sv
svp
tHMG1
tai
tap
tin
tio
tj
tll
toe
topi
trem
trh
tup
twi
tx
unpg
usp
vfl
vri
wek
woc
yki
zen
zf30C
zfh2
zld
ATbp
Abd-B
Antp
Asciz
Atf-2
Atf3
B-H2
BEAF-32
Bdp1
Blimp-1
BtbVII
Bteb2
BuGZ
CG10147
CG10209
CG10267
CG10274
CG10431
CG10462
CG10543
CG10565
CG10631
CG10654
CG10669
CG10979
CG11398
CG11504
CG11617
CG11723
CG11762
CG11902
CG12071
CG12104
CG12155
CG12219
CG12236
CG12299
CG1233
CG12391
CG12659
CG12744
CG12768
CG12769
CG12942
CG13123
CG13204
CG13296
CG13424
CG13624
CG13775
CG13894
CG14655
CG14710
CG14711
CG14965
CG15011
CG15073
CG15269
CG1529
CG15479
CG15514
CG15601
CG15696
CG15710
CG1602
CG1603
CG1620
CG1621
CG1647
CG1663
CG16779
CG16815
CG16863
CG17181
CG17186
CG17359
CG17385
CG17568
CG17802
CG17806
CG17829
CG17912
CG1792
CG18011
CG18262
CG1832
CG18476
CG18599
CG18619
CG18764
CG2116
CG2120
CG2202
CG2678
CG2712
CG2875
CG30020
CG3032
CG30403
CG30431
CG3065
CG31365
CG31388
CG31627
CG3163
CG32006
CG32264
CG3281
CG33017
CG33213
CG33557
CG3407
CG34367
CG34376
CG34406
CG3838
CG3919
CG3995
CG4282
CG4318
CG4328
CG43347
CG4424
CG4617
CG4707
CG4820
CG4854
CG5180
CG5204
CG5245
CG6254
CG6276
CG6654
CG6683
CG6765
CG6792
CG6808
CG6813
CG6854
CG7045
CG7101
CG7271
CG7368
CG7556
CG7745
CG7786
CG7839
CG7928
CG7987
CG8089
CG8159
CG8281
CG8290
CG8301
CG8319
CG8359
CG8388
CG8478
CG8632
CG8924
CG8944
CG9139
CG9437
CG9609
CG9705
CG9727
CG9797
CG9817
CG9876
CG9948
CHES-1-like
CTCF
Camta
Chrac-16
Clamp
Clk
CoRest
Coop
CrebA
CrebB
Crg-1
D
D1
D19A
D19B
Dad
Deaf1
Dek
Dfd
Dif
Dip3
Dll
Dp
E(bx)
E(spl)m3-HLH
E(spl)m5-HLH
E(spl)m7-HLH
E(spl)m8-HLH
E(spl)mβ-HLH
E(spl)mγ-HLH
E(var)3-9
E(z)
ERR
EcR
Eip74EF
Eip75B
Eip78C
Eip93F
Elba2
Ets21C
Ets65A
Ets96B
Ets97D
Fer1
Fer2
Fer3
FoxL1
GATAd
HHEX
HLH106
HLH54F
HLHmδ
Hand
Hey
HmgD
HmgZ
Hmr
Hmx
Hnf4
Hr3
Hr38
Hr39
Hr4
Hr46
Hr51
Hr78
Hr83
Hr96
Hsf
Jarid2
Jra
Kah
Klf15
Kr
Lhr
Lpt
M1BP
MESR4
MTF-1
Mabi
Mad
Max
Med
Meics
Mes4
Met
Mio
Mnt
Mondo
Myb
Myc
N
NC2alpha
NC2α
NC2β
NK7.1
Neu2
Nf-YB
Nf-YC
NfI
OdsH
Oli
Orc2
PHDP
Pcl
Pdp1
Pif1A
Pif1B
Plzf
Rel
RpII215
Side
Sin3A
Six4
Smox
Snoo
Sox100B
Sox102F
Sox14
Sox15
Sp1
Spps
Sry-beta
Sry-delta
Sry-β
Sry-δ
Ssrp
Stat92E
Su(H)
Su(var)2-10
Su(var)2-HP2
Su(var)205
Su(var)3-7
Su(var)3-9
TFAM
Tbp
Trl
Ubx
Usf
Vsx1
Vsx2
Xbp1
YL-1
ZIPIC
Zif
ab
abd-A
ac
achi
acj6
ash1
az2
bab1
bab2
bcd
bigmax
bon
br
brk
bsh
btn
cad
cato
caup
cbt
cg
chif
chn
cic
cnc
corto
crc
crp
cwo
cyc
da
dac
disco
disco-r
dl
dm
dmrt11E
dmrt93B
dmrt99B
dpn
dsf
dsx
emc
ems
en
esn
eve
ewg
exd
exex
ey
eyg
fd102C
fd3F
fd59A
fd64A
fd85E
fd96Cb
fkh
foxo
fru
ftz-f1
fu2
gcm
gcm2
gem
gfzf
gl
grau
grh
grn
gro
gsb-n
h
her
hkb
hth
ind
insv
jim
jing
jumu
kay
kni
l(3)neo38
lab
lbe
lilli
lola
lov
luna
lz
maf-S
mam
mirr
mod(mdg4)
nau
nej
nerfin-1
net
nmo
noc
nom
oc
odd
org-1
ouib
ovo
p53
pad
pan
pb
pdm3
pfk
pho
phol
pita
pnt
prd
prg
pros
psq
pum
pzg
repo
rgr
run
sage
salm
salr
sc
schlank
scrt
sd
sens
shn
sima
slou
slp2
spab
sqz
ss
stwl
su(Hw)
sug
sv
svp
tHMG1
tai
tap
tin
tio
tj
tll
toe
topi
trem
trh
tup
twi
tx
unpg
usp
vfl
vri
wek
woc
yki
zen
zf30C
zfh2
zld
adult
embryonic
firstinstarlarva
larva
prepupa
pupa
thirdinstarlarva
unknown
wanderingthirdinstarlarva
adult
embryonic
firstinstarlarva
larva
prepupa
pupa
thirdinstarlarva
unknown
wanderingthirdinstarlarva
alignments
control normalized signal
optimal IDR thresholded peaks
peaks
peaks and background as input for IDR
read-depth normalized signal
reads
signal of unique reads
alignments
control normalized signal
optimal IDR thresholded peaks
peaks
peaks and background as input for IDR
read-depth normalized signal
reads
signal of unique reads
Unzipped download size: 0 bytes (limit 10 GB per download)
DownLoad
Fly Reference Genome
R5
R6
Worm Reference Genome
ce10
ce11
Project and Website Description
Worm
Fly
File Descriptions
ChipSeq By Gene
ChipSeq By LifeStage
RNASeq
Choose Files for DownLoad
Download Selected Files
Worm Transcription Factor Deletion Strains
Identifier
Description
Select File
Strain
Genome Reads(M)
Xome Reads(M)
rRNA Reads(M)
PCR Dup Rate
ENCODE
blmp-1
Gene
YL616
ENCSR904SRB
C08G9.2
Gene
YL619
ENCSR854IUV
ceh-14
Gene
TB528
ENCSR703MZV
ceh-18
Gene
YL620
ENCSR045YIY
ceh-2
Gene
TB200
ENCSR515CPF
ceh-24
Gene
PD4588
ENCSR090LWC
ceh-30
Gene
MT13544
ENCSR076GLF
ceh-31
Gene
YL621
ENCSR100MRQ
ceh-9
Gene
YL633
ENCSR268AYK
ces-1
Gene
YL617
ENCSR505CUO
dve-1
Gene
YL622
ENCSR871ZUL
elt-4
Gene
JM124
ENCSR376GOU
eyg-1
Gene
VC1800
ENCSR140LPS
F53H4.5
Gene
YL631
ENCSR460SCK
fax-1
Gene
RB812
ENCSR201IYE
fkh-10
Gene
RB884
ENCSR220XWB
fkh-6
Gene
YL618
ENCSR842ZEY
ham-2
Gene
YL634
ENCSR605ZHG
hlh-15
Gene
YL625
ENCSR557EIM
lim-6
Gene
OH110
ENCSR672TJW
lin-11
Gene
YL623
ENCSR604JWW
mab-5
Gene
VC1477
ENCSR903WMN
mec-3
Gene
VC2396
ENCSR515LRW
pag-3
Gene
VC369
ENCSR393TIU
pqm-1
Gene
RB711
ENCSR824SAT
rnt-1
Gene
VC200
ENCSR440PSJ
sox-4
Gene
VC1544
ENCSR112DJF
tbx-7
Gene
VC1976
ENCSR074LSD
ttx-3
Gene
YL627
ENCSR749PKY
unc-3
Gene
YL626
ENCSR346XNS
unc-42
Gene
YL624
ENCSR487NLT
unc-86
Gene
YL628
ENCSR142SGV
WT
Gene
VC2010
ENCSR968SQN
Y22D7AL.16
Gene
YL630
ENCSR735OTY
zip-5
Gene
VC1392
ENCSR170SEJ
Last Updated from ENCODE:
Wednesday, February 5, 2020, 11:11:39 AM Pacific Standard Time